stellarphot — Per-File Call Graphs#
This page shows, for each file (or small group of tightly coupled files), the functions and classes it contains and how they call each other.
Legend — the node types used in every diagram on this page:
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
a_class["A class or method<br/>defined in the file"]:::cls
a_func["A module-level function<br/>defined in the file"]:::fn
a_ext["Code outside the file(s)<br/>in this diagram"]:::external
a_class ~~~ a_func ~~~ a_ext
Solid arrows — a direct call or instantiation.
Dashed arrows — file or network I/O, or an optional path.
core.py — data classes — and catalogs.py — catalog fetchers#
BaseEnhancedTable is a validated astropy.table.QTable; the three public
table classes inherit from it. The catalog fetcher functions live in
catalogs.py and all funnel through CatalogData.from_vizier().
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
qtable["astropy QTable"]:::external
subgraph sg_base["BaseEnhancedTable"]
direction TB
bet_init["__init__()"]:::cls
bet_validate["_validate_columns()"]:::cls
bet_colnames["_update_colnames()"]:::cls
bet_read["read()"]:::cls
bet_write["write()"]:::cls
bet_clean["clean()"]:::cls
end
subgraph sg_subclasses["subclasses"]
direction TB
pd_cls["PhotometryData"]:::cls
cd_cls["CatalogData"]:::cls
sld_cls["SourceListData"]:::cls
end
subgraph sg_catalogs["catalog fetchers (catalogs.py)"]
direction TB
apass_fn["apass_dr9()"]:::fn
refcat_fn["refcat2()"]:::fn
vsx_fn["vsx_vizier()"]:::fn
end
trep_ser["table_representations<br/>serialize / deserialize"]:::external
aavso_ext["io.aavso<br/>write_aavso_extended()"]:::external
vizier_ext["astroquery Vizier / XMatch"]:::external
sg_base -.->|"extends"| qtable
pd_cls -->|"inherits"| bet_init
cd_cls -->|"inherits"| bet_init
sld_cls -->|"inherits"| bet_init
bet_init --> bet_validate
bet_init --> bet_colnames
bet_read --> trep_ser
bet_write --> trep_ser
pd_cls --> pd_bjd["add_bjd_col()"]:::cls
pd_cls --> pd_lc["lightcurve_for()"]:::cls
pd_cls --> pd_aavso["write_aavso_extended()"]:::cls
pd_aavso --> aavso_ext
cd_cls --> cd_viz["from_vizier()"]:::cls
cd_cls --> cd_pass["passband_columns()"]:::cls
cd_viz --> cd_tidy["_tidy_vizier_catalog()"]:::cls
cd_viz --> vizier_ext
apass_fn --> cd_viz
refcat_fn --> cd_viz
vsx_fn --> cd_viz
click bet_init href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bet_validate href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bet_colnames href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bet_read href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bet_write href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bet_clean href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click pd_cls href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click cd_cls href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click sld_cls href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click apass_fn href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
click refcat_fn href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
click vsx_fn href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
click pd_bjd href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click pd_lc href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click pd_aavso href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click cd_viz href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click cd_pass href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click cd_tidy href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click trep_ser href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
click aavso_ext href "stellarphot/api_reference.html#module-stellarphot.io" "io/aavso.py"
photometry/photometry.py — the aperture photometry pipeline#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
ap_call["AperturePhotometry.__call__()"]:::cls
multi["multi_image_photometry()"]:::fn
single["single_image_photometry()"]:::fn
findclose["find_too_close()"]:::fn
skystats["clipped_sky_per_pix_stats()"]:::fn
noise["calculate_noise()"]:::fn
fastfwhm["source_detection<br/>fast_fwhm_from_image()"]:::external
fwhm["source_detection<br/>compute_fwhm()"]:::external
sld_read["SourceListData.read()"]:::external
centroid["photutils<br/>centroid_sources()"]:::external
apphot["photutils<br/>aperture_photometry()"]:::external
pdata["PhotometryData()"]:::external
bjd["PhotometryData.add_bjd_col()"]:::external
ap_call -->|"path is a directory"| multi
ap_call -->|"path is a file"| single
multi -->|"once per image"| single
multi --> sld_read
single --> sld_read
single --> fastfwhm
single --> findclose
single --> centroid
single --> apphot
single --> skystats
single --> fwhm
single --> noise
single --> pdata
single --> bjd
click ap_call href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click multi href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click single href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click findclose href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click skystats href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click noise href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
click fastfwhm href "stellarphot/api_reference.html#module-stellarphot.photometry.source_detection" "source_detection.py"
click fwhm href "stellarphot/api_reference.html#module-stellarphot.photometry.source_detection" "source_detection.py"
click sld_read href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click pdata href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click bjd href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
photometry/source_detection.py + photometry/profiles.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_srcdet["source_detection.py"]
direction TB
srcdet["source_detection()"]:::fn
fwhm["compute_fwhm()"]:::fn
fastfwhm["fast_fwhm_from_image()"]:::fn
end
subgraph sg_prof["profiles.py"]
direction TB
findcenter["find_center()"]:::fn
cap_init["CenterAndProfile.__init__()"]:::cls
cap_cog["CenterAndProfile<br/>curve_of_growth"]:::cls
cap_noise["CenterAndProfile<br/>noise() / snr()"]:::cls
end
dao["photutils DAOStarFinder"]:::external
fitters["photutils fit_2dgaussian /<br/>fit_fwhm / data_properties"]:::external
radprof["photutils RadialProfile"]:::external
cog["photutils CurveOfGrowth"]:::external
centroids["photutils centroid_com"]:::external
sld["SourceListData()"]:::external
calcnoise["photometry.py<br/>calculate_noise()"]:::external
srcdet --> dao
srcdet --> fwhm
srcdet --> sld
fwhm --> fitters
fastfwhm --> dao
fastfwhm --> fitters
findcenter --> centroids
cap_init --> findcenter
cap_init --> radprof
cap_cog --> cog
cap_noise --> calcnoise
click srcdet href "stellarphot/api_reference.html#module-stellarphot.photometry.source_detection" "source_detection.py"
click fwhm href "stellarphot/api_reference.html#module-stellarphot.photometry.source_detection" "source_detection.py"
click fastfwhm href "stellarphot/api_reference.html#module-stellarphot.photometry.source_detection" "source_detection.py"
click findcenter href "stellarphot/api_reference.html#module-stellarphot.photometry.profiles" "profiles.py"
click cap_init href "stellarphot/api_reference.html#module-stellarphot.photometry.profiles" "profiles.py"
click cap_cog href "stellarphot/api_reference.html#module-stellarphot.photometry.profiles" "profiles.py"
click cap_noise href "stellarphot/api_reference.html#module-stellarphot.photometry.profiles" "profiles.py"
click sld href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click calcnoise href "stellarphot/api_reference.html#module-stellarphot.photometry.photometry" "photometry.py"
settings/models.py + settings/astropy_pydantic.py#
PhotometrySettings is a pure composition of the other models; the arrows
below mean “has a field of this type”. All models inherit from
BaseModelWithTableRep, which registers YAML representers so settings can be
embedded in table metadata.
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
ps["PhotometrySettings"]:::cls
subgraph sg_components["component models"]
direction TB
cam["Camera"]:::cls
obs["Observatory"]:::cls
apert["PhotometryApertures"]:::cls
srcloc["SourceLocationSettings"]:::cls
opt["PhotometryOptionalSettings"]:::cls
pbm["PassbandMap"]:::cls
logset["LoggingSettings"]:::cls
end
pbe["PassbandMapEntry"]:::cls
aavsof["AAVSOFilters<br/>(aavso_models.py)"]:::external
fwhmm["FwhmMethods"]:::cls
subgraph sg_apydantic["astropy_pydantic.py"]
direction TB
qty["UnitType / QuantityType"]:::fn
equiv["EquivalentTo /<br/>WithPhysicalType"]:::fn
astroval["AstropyValidator"]:::fn
end
basemodel["BaseModelWithTableRep"]:::cls
tabrep["table_representations<br/>generate_table_representers()"]:::external
partial_fn["_make_partial_model()"]:::fn
partialps["PartialPhotometrySettings"]:::cls
exo["Exoplanet"]:::cls
runset["PhotometryRunSettings"]:::cls
ps --> cam
ps --> obs
ps --> apert
ps --> srcloc
ps --> opt
ps --> pbm
ps --> logset
pbm --> pbe
pbe --> aavsof
opt --> fwhmm
cam --> qty
cam --> equiv
obs --> qty
exo --> astroval
basemodel --> tabrep
ps -->|"inherits"| basemodel
partial_fn -->|"generates"| partialps
partialps -.-> ps
runset -.->|"plain pydantic<br/>BaseModel"| ps
click ps href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click cam href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click obs href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click apert href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click srcloc href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click opt href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click pbm href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click logset href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click pbe href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click fwhmm href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click basemodel href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click partial_fn href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click partialps href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click exo href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click runset href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click aavsof href "stellarphot/settings.html#module-stellarphot.settings" "aavso_models.py"
click qty href "stellarphot/settings.html#module-stellarphot.settings" "astropy_pydantic.py"
click equiv href "stellarphot/settings.html#module-stellarphot.settings" "astropy_pydantic.py"
click astroval href "stellarphot/settings.html#module-stellarphot.settings" "astropy_pydantic.py"
click tabrep href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
gui/custom_widgets.py — widget layer#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
review["ReviewSettings"]:::cls
swt["SettingWithTitle"]:::cls
cmn["ChooseOrMakeNew"]:::cls
confirm["Confirm"]:::cls
addsave["_add_saving_to_widget()"]:::fn
runner["PhotometryRunner"]:::cls
tps["TessPhotometrySetup"]:::cls
spinner["Spinner"]:::cls
saved["SavedSettings<br/>(settings_files.py)"]:::external
pwds["PhotometryWorkingDirSettings<br/>(settings_files.py)"]:::external
uigen["ui_generator()<br/>(views.py)"]:::external
fo["FitsOpener<br/>(fits_opener.py)"]:::external
tpsetup["io.tess<br/>tess_photometry_setup()"]:::external
runsettings["PhotometryRunSettings<br/>(models.py)"]:::external
papermill["papermill executes<br/>photometry_runner.ipynb"]:::external
review --> swt
review --> addsave
addsave --> pwds
swt --> cmn
cmn --> saved
cmn --> uigen
cmn --> confirm
runner --> fo
runner --> confirm
runner -->|"_file_chosen()"| runsettings
runner -->|"_confirmation()"| papermill
tps --> fo
tps --> confirm
tps --> spinner
tps -->|"watch_confirmation()"| tpsetup
click review href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click swt href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click cmn href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click confirm href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click addsave href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click runner href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click tps href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click spinner href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click saved href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click uigen href "stellarphot/api_reference.html#module-stellarphot.gui" "views.py"
click fo href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click tpsetup href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click runsettings href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click papermill href "https://github.com/feder-observatory/stellarphot/blob/main/stellarphot/notebooks/photometry_runner.ipynb" "photometry_runner.ipynb"
settings/settings_files.py + gui/fits_opener.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_saved["per-user saved settings"]
direction TB
saved["SavedSettings"]:::cls
sfo["SavedFileOperations<br/>save() / get() / delete()"]:::cls
cams["Cameras"]:::cls
obss["Observatories"]:::cls
pbms["PassbandMaps"]:::cls
end
subgraph sg_wd["working-directory settings"]
direction TB
pwds["PhotometryWorkingDirSettings"]:::cls
pwds_save["save()"]:::cls
pwds_load["load()"]:::cls
pwds_partial["_are_partial_actually_full() /<br/>_update_settings_from_partial()"]:::cls
pwds_conflict["_resolve_full_partial_conflict()"]:::cls
end
subgraph sg_fo["fits_opener.py"]
direction TB
fo["FitsOpener"]:::cls
fo_ccd["ccd / header properties"]:::cls
fo_load["load_in_image_widget()"]:::cls
end
models["models.py<br/>Camera, Observatory, PassbandMap,<br/>PhotometrySettings, Partial..."]:::external
userdir["JSON files in<br/>platform settings dir"]:::external
wdjson["photometry_settings.json /<br/>partial_photometry_settings.json"]:::external
filechooser["ipyfilechooser FileChooser"]:::external
ccddata["astropy CCDData.read()"]:::external
cams -->|"inherits"| sfo
obss -->|"inherits"| sfo
pbms -->|"inherits"| sfo
saved --> cams
saved --> obss
saved --> pbms
saved --> models
sfo -.-> userdir
pwds --> pwds_save
pwds --> pwds_load
pwds_save --> pwds_partial
pwds_load --> pwds_conflict
pwds --> models
pwds_save -.-> wdjson
pwds_load -.-> wdjson
fo --> filechooser
fo_ccd --> ccddata
fo --> fo_ccd
fo --> fo_load
click saved href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click sfo href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click cams href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click obss href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pbms href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds_save href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds_load href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds_partial href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click pwds_conflict href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click fo href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click fo_ccd href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click fo_load href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click models href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
io/aij.py + io/aavso.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_aij["aij.py — AstroImageJ compatibility"]
direction TB
afa["ApertureFileAIJ"]:::cls
afa_from["from_table()"]:::cls
afa_rw["read() / write()"]:::cls
multiap["MultiApertureAIJ"]:::cls
apaij["ApertureAIJ"]:::cls
gen["generate_aij_table()"]:::fn
parse["parse_aij_table()"]:::fn
iscomp["_is_comp()"]:::fn
star["Star"]:::cls
end
subgraph sg_aavso["aavso.py — AAVSO extended format"]
direction TB
waavso["write_aavso_extended()"]:::fn
fmt["field validators & formatters<br/>(_format_mag, _format_airmass,<br/>_require_nonblank, ...)"]:::fn
end
aavso_hdr["AAVSOSubmissionHeader<br/>(settings/aavso_submission.py)"]:::external
aavso_filters["AAVSOFilters<br/>(settings/aavso_models.py)"]:::external
aijfile["AIJ .apertures file"]:::external
aavsofile["AAVSO submission .txt"]:::external
afa --> multiap
multiap --> apaij
afa_from --> afa
afa_rw -.-> aijfile
gen --> iscomp
parse --> star
waavso --> fmt
waavso --> aavso_hdr
waavso --> aavso_filters
waavso -.-> aavsofile
click afa href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click afa_from href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click afa_rw href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click multiap href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click apaij href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click gen href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click parse href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click iscomp href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click star href "stellarphot/api_reference.html#module-stellarphot.io" "io/aij.py"
click waavso href "stellarphot/api_reference.html#module-stellarphot.io" "io/aavso.py"
click fmt href "stellarphot/api_reference.html#module-stellarphot.io" "io/aavso.py"
click aavso_hdr href "stellarphot/settings.html#module-stellarphot.settings" "aavso_submission.py"
click aavso_filters href "stellarphot/settings.html#module-stellarphot.settings" "aavso_models.py"
io/tess.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
tsetup["tess_photometry_setup()"]:::fn
toi["TOI"]:::cls
toi_from["TOI.from_tic_id()"]:::cls
toi_transit["TOI.transit_time_for_observation()"]:::cls
ttf["TessTargetFile"]:::cls
ttf_get["_retrieve_target_file()"]:::cls
ttf_build["_build_table()"]:::cls
tsub["TessSubmission"]:::cls
tsub_from["TessSubmission.from_header()"]:::cls
tsub_props["base_name / seeing_profile /<br/>field_image properties"]:::cls
gettic["transit_fitting.io<br/>get_tic_info()"]:::external
exofop["ExoFOP TOI table<br/>(web query)"]:::external
gaia_svc["astro.louisville.edu<br/>GAIA target list service"]:::external
sld["SourceListData"]:::external
outfiles["TIC-(id)-info.json,<br/>TIC-(id)-source-list-input.ecsv"]:::external
tsetup -->|"tic_id given"| toi_from
toi_from --> gettic
toi_from -.-> exofop
toi_from --> toi
toi --> toi_transit
tsetup --> ttf
ttf --> ttf_get
ttf --> ttf_build
ttf_get -.-> gaia_svc
tsetup --> sld
tsetup -.->|"writes"| outfiles
tsub_from --> tsub
tsub --> tsub_props
click tsetup href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click toi href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click toi_from href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click toi_transit href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click ttf href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click ttf_get href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click ttf_build href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click tsub href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click tsub_from href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click tsub_props href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click gettic href "stellarphot/api_reference.html#module-stellarphot.transit_fitting.io" "transit_fitting/io.py"
click sld href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
differential_photometry/#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_rel["aij_rel_fluxes.py"]
direction TB
addcol["add_relative_flux_column()"]:::fn
calc["calc_aij_relative_flux()"]:::fn
quad["add_in_quadrature()"]:::fn
end
subgraph sg_vsx["vsx_mags.py"]
direction TB
multivmag["calc_multi_vmag()"]:::fn
vmag["calc_vmag()"]:::fn
end
pdread["PhotometryData.read()"]:::external
sldread["SourceListData.read()"]:::external
skymatch["SkyCoord<br/>match_to_catalog_sky()"]:::external
addcol --> pdread
addcol --> sldread
addcol --> calc
calc --> quad
calc --> skymatch
multivmag --> vmag
vmag --> skymatch
click addcol href "stellarphot/api_reference.html#module-stellarphot.differential_photometry" "aij_rel_fluxes.py"
click calc href "stellarphot/api_reference.html#module-stellarphot.differential_photometry" "aij_rel_fluxes.py"
click quad href "stellarphot/api_reference.html#module-stellarphot.differential_photometry" "aij_rel_fluxes.py"
click multivmag href "stellarphot/api_reference.html#module-stellarphot.differential_photometry" "vsx_mags.py"
click vmag href "stellarphot/api_reference.html#module-stellarphot.differential_photometry" "vsx_mags.py"
click pdread href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click sldread href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
transit_fitting/#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_core["core.py"]
direction TB
tmf_setup["TransitModelFit.setup_model()"]:::cls
tmf_internal["_setup_transit_model() /<br/>_set_default_batman_params()"]:::cls
tmf_fit["TransitModelFit.fit()"]:::cls
tmf_lc["model_light_curve() /<br/>data_light_curve()"]:::cls
tmf_detrend["_detrend()"]:::cls
tmf_bic["BIC / n_fit_parameters"]:::cls
fitter["VariableArgsFitter.__call__()"]:::cls
opts["TransitModelOptions"]:::cls
end
subgraph sg_gui["gui/transit_fitting_gui.py<br/>(stellarphot.gui)"]
direction TB
exotic["exotic_settings_widget()"]:::fn
pop_tic["populate_TIC_boxes()"]:::fn
pop_toi["populate_TOI_boxes()"]:::fn
checker["make_checker()"]:::fn
getvals["get_values_from_widget()"]:::fn
genjson["generate_json_file_name()"]:::fn
setjson["set_values_from_json_file()"]:::fn
end
gettic["io.py — get_tic_info()"]:::fn
ingress["plotting.py —<br/>plot_predict_ingress_egress()"]:::fn
batman["batman TransitModel"]:::external
leastsq["scipy.optimize.leastsq"]:::external
mast["astroquery MAST Catalogs"]:::external
tmf_setup --> tmf_internal
tmf_internal --> batman
tmf_fit --> fitter
fitter --> leastsq
tmf_lc --> tmf_detrend
tmf_bic -.-> tmf_fit
opts -.->|"configures"| tmf_setup
checker --> gettic
pop_tic --> gettic
exotic --> setjson
genjson --> getvals
gettic --> mast
click tmf_setup href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click tmf_internal href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click tmf_fit href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click tmf_lc href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click tmf_detrend href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click tmf_bic href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click fitter href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click opts href "stellarphot/api_reference.html#module-stellarphot.transit_fitting" "transit_fitting/core.py"
click exotic href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click pop_tic href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click pop_toi href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click checker href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click getvals href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click genjson href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click setjson href "stellarphot/api_reference.html#module-stellarphot.gui.transit_fitting_gui" "gui/transit_fitting_gui.py"
click gettic href "stellarphot/api_reference.html#module-stellarphot.transit_fitting.io" "transit_fitting/io.py"
click ingress href "stellarphot/api_reference.html#module-stellarphot.transit_fitting.plotting" "transit_fitting/plotting.py"
gui/comparison_functions.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
cv_init["ComparisonViewer.__init__()"]:::cls
cv_setup["_init()"]:::cls
cv_viewer["_viewer()"]:::cls
cv_table["generate_table()"]:::cls
cv_saveloc["_save_source_location_file()"]:::cls
cv_saveap["_save_aperture_to_file()"]:::cls
cv_tess["tess_field_view() /<br/>tess_field_zoom_view()"]:::cls
markers["make_markers()"]:::fn
wrapfn["wrap()"]:::fn
fo["FitsOpener"]:::external
setup_ext["comparison_utils.set_up()"]:::external
xmatch_ext["comparison_utils<br/>crossmatch_APASS2VSX()"]:::external
magscale_ext["comparison_utils.mag_scale()"]:::external
keybind["seeing_profile_functions<br/>set_keybindings()"]:::external
sld["SourceListData"]:::external
locfile["source_locations.ecsv"]:::external
cv_init --> cv_setup
cv_init --> cv_viewer
cv_setup --> fo
cv_setup --> setup_ext
cv_setup --> xmatch_ext
cv_setup --> magscale_ext
cv_setup --> markers
cv_viewer --> keybind
cv_viewer --> wrapfn
cv_saveloc --> cv_table
cv_saveloc --> sld
cv_saveloc -.->|"writes"| locfile
cv_saveap --> cv_table
cv_tess --> markers
click cv_init href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_setup href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_viewer href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_table href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_saveloc href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_saveap href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click cv_tess href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click markers href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click wrapfn href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click fo href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click setup_ext href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click xmatch_ext href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click magscale_ext href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click keybind href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click sld href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
gui — seeing profile and TESS analysis widgets#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_seeing["seeing_profile_functions.py"]
direction TB
spw_init["SeeingProfileWidget.__init__()"]:::cls
spw_show["_make_show_event()"]:::cls
spw_plots["_update_plots()"]:::cls
spw_save["save()"]:::cls
spw_tess["_construct_tess_sub()"]:::cls
keybind["set_keybindings()"]:::fn
end
subgraph sg_combined["profile_and_comps.py"]
direction TB
cas["ComparisonAndSeeing"]:::cls
end
subgraph sg_taic["photometry_widget_functions.py"]
direction TB
taic["TessAnalysisInputControls"]:::cls
fbd["filter_by_dates()"]:::fn
end
fo["FitsOpener"]:::external
cmn["ChooseOrMakeNew('camera')"]:::external
pwds["PhotometryWorkingDirSettings"]:::external
cap["photometry.profiles<br/>CenterAndProfile"]:::external
splot["plotting.seeing_plot()"]:::external
apert["PhotometryApertures"]:::external
tsub["io.TessSubmission.from_header()"]:::external
cviewer["ComparisonViewer"]:::external
pdata["PhotometryData"]:::external
spw_init --> fo
spw_init --> cmn
spw_init --> pwds
spw_show --> cap
spw_show --> spw_plots
spw_plots --> splot
spw_show --> apert
spw_save --> pwds
spw_tess --> tsub
cas --> spw_init
cas --> cviewer
taic --> pdata
taic -.-> fbd
click spw_init href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click spw_show href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click spw_plots href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click spw_save href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click spw_tess href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click keybind href "stellarphot/api_reference.html#module-stellarphot.gui" "seeing_profile_functions.py"
click cas href "stellarphot/api_reference.html#module-stellarphot.gui" "profile_and_comps.py"
click taic href "stellarphot/api_reference.html#module-stellarphot.gui" "photometry_widget_functions.py"
click fbd href "stellarphot/api_reference.html#module-stellarphot.gui" "photometry_widget_functions.py"
click fo href "stellarphot/api_reference.html#module-stellarphot.gui" "fits_opener.py"
click cmn href "stellarphot/api_reference.html#module-stellarphot.gui" "custom_widgets.py"
click pwds href "stellarphot/settings.html#module-stellarphot.settings" "settings_files.py"
click cap href "stellarphot/api_reference.html#module-stellarphot.photometry.profiles" "profiles.py"
click splot href "stellarphot/api_reference.html#module-stellarphot.plotting" "aij_plots.py"
click apert href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click tsub href "stellarphot/api_reference.html#module-stellarphot.io" "io/tess.py"
click cviewer href "stellarphot/api_reference.html#module-stellarphot.gui" "comparison_functions.py"
click pdata href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
plotting/#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_transit["transit_plots.py"]
direction TB
ptl["plot_transit_lightcurve()"]:::fn
pmf["plot_many_factors()"]:::fn
sas["scale_and_shift()"]:::fn
bindata["bin_data()"]:::fn
end
subgraph sg_multi["multi_night_plots.py"]
direction TB
mn["multi_night()"]:::fn
pmag["plot_magnitudes()"]:::fn
end
subgraph sg_aij["aij_plots.py"]
direction TB
splot["seeing_plot()"]:::fn
end
apert["settings<br/>PhotometryApertures"]:::external
mpl["matplotlib"]:::external
ptl --> pmf
pmf --> sas
mn --> pmag
splot --> apert
ptl --> mpl
pmag --> mpl
splot --> mpl
bindata -.->|"used directly by<br/>transit notebooks"| mpl
click ptl href "stellarphot/api_reference.html#module-stellarphot.plotting" "transit_plots.py"
click pmf href "stellarphot/api_reference.html#module-stellarphot.plotting" "transit_plots.py"
click sas href "stellarphot/api_reference.html#module-stellarphot.plotting" "transit_plots.py"
click bindata href "stellarphot/api_reference.html#module-stellarphot.plotting" "transit_plots.py"
click mn href "stellarphot/api_reference.html#module-stellarphot.plotting" "multi_night_plots.py"
click pmag href "stellarphot/api_reference.html#module-stellarphot.plotting" "multi_night_plots.py"
click splot href "stellarphot/api_reference.html#module-stellarphot.plotting" "aij_plots.py"
click apert href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
utils/ — magnitude transforms and comparison helpers#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_mag["magnitude_transforms.py"]
direction TB
t2c["transform_to_catalog()"]:::fn
tmags["transform_magnitudes()"]:::fn
ctc["calculate_transform_coefficients()"]:::fn
cfi["calibrated_from_instrumental()"]:::fn
resid["calc_residual()"]:::fn
ftrans["filter_transform()"]:::fn
end
subgraph sg_sys["magnitude_system_transforms.py"]
direction TB
tab["transform_apass_bands()"]:::fn
trb["transform_refcat2_bands()"]:::fn
ps1["PanStarrs1ToJohnsonCousins"]:::cls
usno["USNOPrimeToSDSSDR7"]:::cls
end
subgraph sg_comp["comparison_utils.py"]
direction TB
setup["set_up()"]:::fn
xmatch["crossmatch_APASS2VSX()"]:::fn
magscale["mag_scale()"]:::fn
infield["in_field()"]:::fn
readfile["read_file()"]:::fn
end
apass["catalogs.apass_dr9()"]:::external
refcat["catalogs.refcat2()"]:::external
vsx["catalogs.vsx_vizier()"]:::external
curvefit["scipy curve_fit"]:::external
t2c --> apass
t2c --> refcat
t2c -->|"as transformer"| tab
t2c -->|"as transformer"| trb
t2c --> curvefit
t2c --> cfi
t2c --> resid
tmags --> ctc
ctc --> cfi
tab --> ps1
trb --> ps1
tab --> usno
setup --> vsx
setup --> infield
setup --> readfile
xmatch --> apass
click t2c href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click tmags href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click ctc href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click cfi href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click resid href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click ftrans href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_transforms.py"
click tab href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_system_transforms.py"
click trb href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_system_transforms.py"
click ps1 href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_system_transforms.py"
click usno href "stellarphot/api_reference.html#module-stellarphot.utils" "magnitude_system_transforms.py"
click setup href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click xmatch href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click magscale href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click infield href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click readfile href "stellarphot/api_reference.html#module-stellarphot.utils" "comparison_utils.py"
click apass href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
click refcat href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
click vsx href "stellarphot/api_reference.html#module-stellarphot.catalogs" "catalogs.py"
table_representations.py + utils/version_migrator.py#
Arrows: solid = a direct call or instantiation; dashed = file or network I/O, or an optional path.
flowchart LR
classDef cls fill:#e1f5fe,stroke:#0277bd,color:#212121
classDef fn fill:#e8f5e9,stroke:#2e7d32,color:#212121
classDef external fill:#eceff1,stroke:#90a4ae,stroke-dasharray: 5 5,color:#212121
subgraph sg_trep["table_representations.py"]
direction TB
gen_rep["generate_table_representers()"]:::fn
ser["serialize_models_in_table_meta()"]:::fn
deser["deserialize_models_in_table_meta()"]:::fn
old_rep["_generate_old_table_representers()"]:::fn
end
subgraph sg_mig["version_migrator.py"]
direction TB
vm["VersionMigrator"]:::cls
vm_migrate["migrate()"]:::cls
vm_v1v2["_migrate_v1_v2()"]:::cls
end
models["settings.models<br/>(pydantic classes)"]:::external
bet_rw["BaseEnhancedTable<br/>read() / write()"]:::external
pdata["PhotometryData"]:::external
camobs["Camera, Observatory,<br/>PassbandMap"]:::external
gen_rep --> models
bet_rw --> ser
bet_rw --> deser
deser --> old_rep
vm --> vm_migrate
vm_migrate --> vm_v1v2
vm_v1v2 --> pdata
vm_v1v2 --> camobs
click gen_rep href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
click ser href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
click deser href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
click old_rep href "stellarphot/api_reference.html#module-stellarphot.table_representations" "table_representations.py"
click vm href "stellarphot/api_reference.html#module-stellarphot.utils" "version_migrator.py"
click vm_migrate href "stellarphot/api_reference.html#module-stellarphot.utils" "version_migrator.py"
click vm_v1v2 href "stellarphot/api_reference.html#module-stellarphot.utils" "version_migrator.py"
click models href "stellarphot/settings.html#module-stellarphot.settings" "models.py"
click bet_rw href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click pdata href "stellarphot/api_reference.html#module-stellarphot.core" "core.py"
click camobs href "stellarphot/settings.html#module-stellarphot.settings" "models.py"